DNA-protein interactions
Links to selected articles from a range of Nature Publishing Group journals in the field of DNA-protein
interactions can be accessed below.
Articles
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation
and massively parallel sequencing FREE ACCESS
Gordon Robertson, Martin Hirst, Matthew Bainbridge, Misha Bilenky, Yongjun Zhao,
Thomas Zeng, Ghia Euskirchen, Bridget Bernier, Richard Varhol, Allen Delaney, Nina Thiessen, Obi L Griffith, Ann He, Marco Marra,
Michael Snyder and Steven Jones
Journal:Nature Methods 4, 651-657 (2007); doi:10.1038/nmeth1068
Abstract |
Matrix
and Steiner-triple-system smart pooling assays for high-performance transcription regulatory network mapping
Vanessa Vermeirssen, Bart
Deplancke, M Inmaculada Barrasa, John S Reece-Hoyes, H Efsun Arda, Christian A Grove, Natalia J Martinez, Reynaldo Sequerra, Lynn
Doucette-Stamm, Michael R Brent and Albertha J M Walhout
Journal:Nature Methods 4, 659-664 (2007); doi:10.1038/nmeth1063
Abstract |
Protocol
Detection of in vivo protein¨CDNA interactions using DamID in mammalian cells
Maartje J Vogel,
Daniel Peric-Hupkes and Bas van Steensel
Journal:Nature Protocols 2, 1467-1478 (2007); doi:10.1038/nprot.2007.148
Abstract |
Review
Cancer epigenomics: DNA methylomes and histone-modification maps
Manel Esteller
Journal:Nature Reviews Genetics
8, 286-298 (2007); doi:10.1038/nrg2005
Abstract |
Protocol
Mapping networks of physical interactions
between genomic elements using 5C technology
Jos¨¦e Dostie and Job Dekker
Journal:Nature Protocols 2, 988-1002 (2007); doi:10.1038/nprot.2007.116
Abstract |
Brief Communication
Single-molecule analysis of DNA-protein complexes using nanopores
Breton Hornblower,
Amy Coombs, Richard D Whitaker, Anatoly Kolomeisky, Stephen J Picone, Amit Meller and Mark Akeson
Journal:Nature Methods 4, 315-317
(2007); doi:10.1038/nmeth1021
Abstract |
Research
Compact, universal DNA microarrays to comprehensively
determine transcription-factor binding site specificities
Michael F Berger, Anthony A Philippakis, Aaron M Qureshi, Fangxue S He, Preston
Journal:Nature Biotechnology 24, 1429-1435 (2006); doi:10.1038/nbt1246
Abstract |
Protocol
Chromatin
immunoprecipitation and microarray-based analysis of protein location
Tong Ihn Lee, Sarah E Johnstone and Richard A Young
Journal:Nature
Protocols 1, 729-748 (2006); doi:10.1038/nprot.2006.98
Abstract |
Articles
DNase-chip: a high-resolution
method to identify DNase I hypersensitive sites using tiled microarrays FREE ACCESS
Gregory E Crawford, Sean Davis, Peter C Scacheri,
Gabriel Renaud, Mohamad J Halawi, Michael R Erdos, Roland Green, Paul S Meltzer, Tyra G Wolfsberg and Francis S Collins
Journal:Nature
Methods 3, 503-509 (2006); doi:10.1038/nmeth888
Abstract |
Genome-scale mapping of DNase I sensitivity
in vivo using tiling DNA microarrays FREE ACCESS
Peter J Sabo, Michael S Kuehn, Robert Thurman, Brett E Johnson, Ericka M Johnson,
Hua Cao, Man Yu, Elizabeth Rosenzweig, Jeff Goldy, Andrew Haydock, Molly Weaver, Anthony Shafer, Kristin Lee, Fidencio Neri, Richard
Humbert, Michael A Singer, Todd A Richmond, Michael O Dorschner, Michael McArthur, Michael Hawrylycz, Roland D Green, Patrick A Navas,
William S Noble and John A Stamatoyannopoulos
Journal:Nature Methods 3, 511-518 (2006); doi:10.1038/nmeth890
Abstract |
Review
Gardening the genome: DNA methylation in Arabidopsis thaliana
Simon W.-L. Chan, Ian R. Henderson and Steven
E. Jacobsen
Journal:Nature Reviews Genetics 6, 351-360 (2005); doi:10.1038/nrg1601
Abstract |
Articles
Enzymatic
capture of an extrahelical thymine in the search for uracil in DNA
Jared B. Parker, Mario A. Bianchet, Daniel J. Krosky, Joshua I.
Friedman, L. Mario Amzel and James T. Stivers
Journal:Nature 449, 433-437 (2007); doi:10.1038/nature06131
Abstract |
Regulation of p53 activity through lysine methylation
Sergei Chuikov, Julia K. Kurash, Jonathan R. Wilson, Bing Xiao, Neil
Justin, Gleb S. Ivanov, Kristine McKinney, Paul Tempst, Carol Prives, Steven J. Gamblin, Nickolai A. Barlev and Danny Reinberg
Journal:Nature
432, 353-360 (2004); doi:10.1038/nature03117
Abstract |
Letters to Editor
Translational and rotational
settings of H2A.Z nucleosomes across the Saccharomycescerevisiae genome
Istvan Albert, Travis N. Mavrich, Lynn P. Tomsho, Ji Qi, Sara
J. Zanton, Stephan C. Schuster and B. Franklin Pugh
Journal:Nature 446, 572-576 (2007); doi:10.1038/nature05632
Abstract |
Letter
Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated
intra- and interchromosomal interactions FREE ACCESS
Zhihu Zhao, Gholamreza Tavoosidana, Mikael Sj?linder, Anita G?nd?r, Piero
Mariano, Sha Wang, Chandrasekhar Kanduri, Magda Lezcano, Kuljeet Singh Sandhu, Umashankar Singh, Vinod Pant, Vijay Tiwari, Sreenivasulu
Kurukuti and Rolf Ohlsson
Journal:Nature Genetics 38, 1341-1347 (2006); doi:10.1038/ng1891
Abstract |
Technical
Report
Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays
Sonali Mukherjee, Michael
F Berger, Ghil Jona, Xun S Wang, Dale Muzzey, Michael Snyder, Richard A Young and Martha L Bulyk
Journal:Nature Genetics 36, 1331-1339
(2004); doi:10.1038/ng1473
Abstract |
Article
Small-molecule interaction with a five-guanine-tract G-quadruplex
structure from the human MYC promoter
Anh Tuan Phan, Vitaly Kuryavyi, Hai Yan Gaw and Dinshaw J Patel
Journal:Nature Chemical Biology
1, 167-173 (2005); doi:10.1038/nchembio723
Abstract |
Web Guider
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